RNA-seq of Penicillium molds growing on cheese - SRA

SRX19681336: RNA-seq of Penicillium molds growing on cheese
1 ILLUMINA (NextSeq 550) run: 6.1M spots, 925.3M bases, 351.3Mb downloads

Design: RNA was extracted and sequencing as described in https://journals.asm.org/doi/10.1128/mBio.02445-19

Submitted by: Tufts University

Study: Transcriptome sequencing of Penicillium molds on cheese

Different species/strains of Penicillium molds were grown on cheese with and without the presence of a neighboring bacterial community

Sample: Transcriptome of cheese Penicillium species

Library:

Name: MB_Co_3_2

Instrument: NextSeq 550

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: RANDOM

Layout: SINGLE

Runs: 1 run, 6.1M spots, 925.3M bases, 351.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR23869244	6,128,046	925.3M	351.3Mb	2024-04-01

Supplemental Content

Penicillium westlingii strain P447 18S ribosomal RNA gene, partial sequence; int...
Penicillium westlingii strain P447 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
gi|2173079449|gb|MZ078727.1|

Nucleotide
Penicillium westlingii culture CBS:127037 strain CBS 127037 small subunit riboso...
Penicillium westlingii culture CBS:127037 strain CBS 127037 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence
gi|1473251372|gb|MH864316.1|

Nucleotide
PREDICTED: Pongo abelii collagen type XI alpha 2 chain (COL11A2), transcript var...
PREDICTED: Pongo abelii collagen type XI alpha 2 chain (COL11A2), transcript variant X4, mRNA
gi|2694657745|ref|XM_054557380.2|

Nucleotide
Aspergillus inflatus isolate CNUFC U8-70 calmodulin (CaM) gene, partial cds
Aspergillus inflatus isolate CNUFC U8-70 calmodulin (CaM) gene, partial cds
gi|2571396800|gb|OP168870.1|

Nucleotide
PREDICTED: Pongo abelii proline rich transmembrane protein 1 (PRRT1), transcript...
PREDICTED: Pongo abelii proline rich transmembrane protein 1 (PRRT1), transcript variant X6, mRNA
gi|2694657703|ref|XM_063725447.1|

Nucleotide

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